Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKFAPKKN_33 | 214463 | 216145 | tet(Q) | ARO:3000191 | tet(Q) | 96.55 | 85.24 | Z21523.1 |
| CKFAPKKN_23 | 139191 | 140081 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| CKFAPKKN_15 | 7515 | 9488 | tet(Q) | ARO:3000191 | tet(Q) | 96.19 | 100.00 | Z21523.1 |
| CKFAPKKN_23 | 116 | 916 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CKFAPKKN_23 | 116 | 916 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| CKFAPKKN_33 | 214497 | 216145 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.00 | 85.62 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKFAPKKN_23 | 139194 | 140081 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| CKFAPKKN_23 | 116 | 913 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| CKFAPKKN_15 | 7563 | 9485 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
| CKFAPKKN_33 | 214496 | 216145 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 97.64 | 85.80 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CKFAPKKN_1 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_2 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_3 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_4 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_5 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_6 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_7 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_8 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_9 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_10 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_11 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_12 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_13 | 1.0 | 0.0 | 1.0 |
| CKFAPKKN_14 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_15 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_16 | 1.0 | 0.0 | 1.0 |
| CKFAPKKN_17 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_18 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_19 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_20 | 1.0 | 0.0 | 1.0 |
| CKFAPKKN_22 | 1.0 | 0.0 | 1.0 |
| CKFAPKKN_23 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_24 | 1.0 | 0.0 | 1.0 |
| CKFAPKKN_25 | 1.0 | 0.0 | 1.0 |
| CKFAPKKN_26 | 1.0 | 0.0 | 1.0 |
| CKFAPKKN_27 | 1.0 | 0.0 | 1.0 |
| CKFAPKKN_28 | 1.0 | 0.0 | 1.0 |
| CKFAPKKN_29 | 1.0 | 0.0 | 1.0 |
| CKFAPKKN_31 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_32 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_33 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_34 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_35 | 0.0 | 1.0 | 0.0 |
| CKFAPKKN_36 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CKFAPKKN_1 | 159431 | 170142 | False | Unknown | VOG5821, |
Phigaro v2.4.0 (Database: Jan. 2024 release)