Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AMLNIBKM_32 | 15946 | 17919 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| AMLNIBKM_5 | 14472 | 15437 | CfxA5 | ARO:3003096 | CfxA5 | 100.00 | 100.00 | AY769934.1 |
| AMLNIBKM_50 | 1828 | 2988 | tet(X) | ARO:3000205 | tet(X) | 99.48 | 99.48 | M37699.1 |
| AMLNIBKM_52 | 1144 | 1968 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| AMLNIBKM_52 | 141 | 941 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AMLNIBKM_52 | 1144 | 1968 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| AMLNIBKM_5 | 14472 | 15437 | cfxA5 | Unknown Beta-lactam | 100.00 | 100.00 | AY769934 |
| AMLNIBKM_32 | 15946 | 17871 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| AMLNIBKM_50 | 1822 | 2988 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| AMLNIBKM_52 | 141 | 941 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AMLNIBKM_52 | 1147 | 1968 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| AMLNIBKM_5 | 14472 | 15434 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | EXACTX | 100.00 | 100.00 | WP_032946415.1 |
| AMLNIBKM_50 | 1822 | 2985 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| AMLNIBKM_32 | 15949 | 17871 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| AMLNIBKM_52 | 141 | 938 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AMLNIBKM_1 | 351016 | 349436 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AMLNIBKM_1 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_2 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_3 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_4 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_5 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_6 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_7 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_8 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_9 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_10 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_11 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_12 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_13 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_14 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_15 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_16 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_17 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_18 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_19 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_20 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_21 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_22 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_23 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_24 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_25 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_26 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_27 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_28 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_29 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_30 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_31 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_32 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_33 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_34 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_35 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_36 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_37 | 1.0 | 0.0 | 1.0 |
| AMLNIBKM_38 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_39 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_40 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_41 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_42 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_43 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_44 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_45 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_46 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_47 | 1.0 | 0.0 | 1.0 |
| AMLNIBKM_48 | 1.0 | 0.0 | 1.0 |
| AMLNIBKM_49 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_50 | 1.0 | 0.0 | 1.0 |
| AMLNIBKM_51 | 1.0 | 0.0 | 1.0 |
| AMLNIBKM_52 | 1.0 | 0.0 | 1.0 |
| AMLNIBKM_53 | 1.0 | 0.0 | 1.0 |
| AMLNIBKM_54 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_55 | 1.0 | 0.0 | 1.0 |
| AMLNIBKM_56 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_57 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_58 | 1.0 | 0.0 | 1.0 |
| AMLNIBKM_59 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_67 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_73 | 0.0 | 1.0 | 0.0 |
| AMLNIBKM_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AMLNIBKM_74 | 62391 | 75215 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)