Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ELBGCPAO_56 | 218346 | 219203 | ErmF | ARO:3000498 | ErmF | 98.50 | 107.14 | M17124.1 |
| ELBGCPAO_56 | 216134 | 218059 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| ELBGCPAO_32 | 7026 | 8951 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ELBGCPAO_32 | 7026 | 8951 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| ELBGCPAO_56 | 218346 | 219146 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ELBGCPAO_32 | 7026 | 8948 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| ELBGCPAO_56 | 218349 | 219146 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| ELBGCPAO_56 | 216137 | 218059 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ELBGCPAO_10 | 73626 | 72046 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ELBGCPAO_1 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_2 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_3 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_4 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_5 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_6 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_7 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_8 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_9 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_10 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_11 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_12 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_13 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_14 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_15 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_16 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_17 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_18 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_19 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_20 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_21 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_22 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_23 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_24 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_25 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_26 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_27 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_28 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_29 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_30 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_31 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_32 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_33 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_34 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_35 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_36 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_37 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_38 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_39 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_40 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_41 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_42 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_43 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_44 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_45 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_46 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_47 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_48 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_49 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_50 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_51 | 1.0 | 0.0 | 1.0 |
| ELBGCPAO_53 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_55 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_56 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_57 | 1.0 | 0.0 | 1.0 |
| ELBGCPAO_58 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_59 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_60 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_61 | 1.0 | 0.0 | 1.0 |
| ELBGCPAO_62 | 1.0 | 0.0 | 1.0 |
| ELBGCPAO_67 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_74 | 0.0 | 1.0 | 0.0 |
| ELBGCPAO_75 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)