Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDMNIKPO_12 | 216579 | 217469 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| JDMNIKPO_4 | 36093 | 36893 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| JDMNIKPO_4 | 33881 | 35806 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| JDMNIKPO_34 | 2583 | 3788 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JDMNIKPO_4 | 36093 | 36893 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| JDMNIKPO_4 | 33881 | 35806 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDMNIKPO_12 | 216582 | 217469 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| JDMNIKPO_34 | 2049 | 2558 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JDMNIKPO_34 | 2586 | 3788 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| JDMNIKPO_4 | 36096 | 36893 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| JDMNIKPO_4 | 33884 | 35806 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JDMNIKPO_55 | 159 | 838 | repUS2 | 682 / 681 | 98.39 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JDMNIKPO_1 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_2 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_3 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_4 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_5 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_6 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_7 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_8 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_9 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_10 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_11 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_12 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_13 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_14 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_15 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_16 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_17 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_18 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_19 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_20 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_21 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_22 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_23 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_24 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_25 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_26 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_27 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_28 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_29 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_30 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_31 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_32 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_33 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_34 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_35 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_36 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_37 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_38 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_39 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_40 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_41 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_42 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_43 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_44 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_45 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_46 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_47 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_49 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_50 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_51 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_52 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_53 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_54 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_55 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_56 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_57 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_58 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_59 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_60 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_62 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_63 | 1.0 | 0.0 | 1.0 |
| JDMNIKPO_66 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_67 | 0.0 | 1.0 | 0.0 |
| JDMNIKPO_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JDMNIKPO_67 | 118334 | 129933 | False | Unknown | VOG0322, |
Phigaro v2.4.0 (Database: Jan. 2024 release)