Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EIEGICHI_17 | 54923 | 55777 | ErmF | ARO:3000498 | ErmF | 98.50 | 106.77 | M17124.1 |
| EIEGICHI_22 | 3148 | 5073 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| EIEGICHI_93 | 53 | 868 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EIEGICHI_93 | 53 | 868 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| EIEGICHI_17 | 55980 | 56767 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 95.52 | ACWG01000053 |
| EIEGICHI_22 | 3148 | 5073 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| EIEGICHI_17 | 54977 | 55777 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EIEGICHI_93 | 56 | 868 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| EIEGICHI_22 | 3148 | 5070 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| EIEGICHI_17 | 54977 | 55774 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| EIEGICHI_17 | 55983 | 56774 | blaOXA | class D beta-lactamase | BLASTX | 98.86 | 96.35 | WP_004295324.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EIEGICHI_1 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_2 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_3 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_4 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_5 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_6 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_7 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_8 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_9 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_10 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_11 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_12 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_13 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_14 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_15 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_16 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_17 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_18 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_19 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_20 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_21 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_22 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_23 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_24 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_25 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_26 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_27 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_28 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_29 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_30 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_31 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_32 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_33 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_34 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_35 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_36 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_37 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_38 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_39 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_40 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_41 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_42 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_43 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_44 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_45 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_46 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_47 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_48 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_49 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_50 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_51 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_52 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_53 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_54 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_55 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_56 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_57 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_58 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_59 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_60 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_61 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_62 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_63 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_64 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_65 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_66 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_67 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_68 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_69 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_70 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_71 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_72 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_73 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_74 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_75 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_76 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_77 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_78 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_79 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_80 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_81 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_82 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_83 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_84 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_85 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_86 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_87 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_88 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_89 | 1.0 | 0.0 | 1.0 |
| EIEGICHI_90 | 0.0 | 1.0 | 0.0 |
| EIEGICHI_91 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EIEGICHI_30 | 17984 | 29507 | False | Siphoviridae | VOG4564, |
| EIEGICHI_42 | 32067 | 40060 | False | Siphoviridae | VOG9606, |
Phigaro v2.4.0 (Database: Jan. 2024 release)