Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOKCLFBP_1 | 343162 | 345087 | tet(Q) | ARO:3000191 | tet(Q) | 99.84 | 97.56 | Z21523.1 |
| HOKCLFBP_10 | 127642 | 128847 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| HOKCLFBP_10 | 105691 | 106593 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| HOKCLFBP_3 | 1 | 1650 | tet(Q) | ARO:3000191 | tet(Q) | 95.26 | 83.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HOKCLFBP_1 | 343162 | 345087 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | Z21523 |
| HOKCLFBP_10 | 105691 | 106593 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | L13472 |
| HOKCLFBP_70 | 177 | 891 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.44 | 89.26 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOKCLFBP_10 | 105694 | 106593 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| HOKCLFBP_10 | 128872 | 129381 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| HOKCLFBP_1 | 343162 | 345084 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.84 | 100.00 | WP_002560998.1 |
| HOKCLFBP_70 | 177 | 890 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 99.58 | 89.47 | WP_002682030.1 |
| HOKCLFBP_10 | 127642 | 128844 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| HOKCLFBP_3 | 1 | 1647 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 98.36 | 85.65 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HOKCLFBP_1 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_2 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_3 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_4 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_5 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_6 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_7 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_8 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_9 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_10 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_11 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_12 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_13 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_14 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_15 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_16 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_17 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_18 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_19 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_20 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_21 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_22 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_23 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_24 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_25 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_26 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_27 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_28 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_29 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_30 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_31 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_32 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_33 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_34 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_35 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_36 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_37 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_38 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_39 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_40 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_41 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_42 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_43 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_44 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_45 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_46 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_47 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_48 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_49 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_50 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_51 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_52 | 0.0 | 1.0 | 0.0 |
| HOKCLFBP_53 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_54 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_55 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_56 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_58 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_59 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_60 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_61 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_62 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_63 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_64 | 1.0 | 0.0 | 1.0 |
| HOKCLFBP_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HOKCLFBP_33 | 5700 | 7907 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)