Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFNJBBKE_23 | 400621 | 401826 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| EFNJBBKE_21 | 9245 | 11218 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
| EFNJBBKE_51 | 1080 | 1904 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| EFNJBBKE_51 | 2 | 877 | ErmF | ARO:3000498 | ErmF | 98.50 | 109.40 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EFNJBBKE_51 | 1080 | 1904 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| EFNJBBKE_21 | 9293 | 11218 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| EFNJBBKE_51 | 77 | 877 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFNJBBKE_51 | 1083 | 1904 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| EFNJBBKE_23 | 400087 | 400596 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| EFNJBBKE_21 | 9293 | 11215 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| EFNJBBKE_23 | 400624 | 401826 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| EFNJBBKE_51 | 77 | 874 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EFNJBBKE_48 | 1978 | 2657 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFNJBBKE_1 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_2 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_3 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_4 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_5 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_6 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_7 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_8 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_9 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_10 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_11 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_12 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_13 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_14 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_15 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_16 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_17 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_18 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_19 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_20 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_21 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_22 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_23 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_24 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_25 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_26 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_27 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_28 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_29 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_30 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_31 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_32 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_33 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_34 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_35 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_36 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_37 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_38 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_39 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_41 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_42 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_43 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_44 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_45 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_46 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_47 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_48 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_49 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_50 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_51 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_52 | 1.0 | 0.0 | 1.0 |
| EFNJBBKE_56 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_59 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_60 | 0.0 | 1.0 | 0.0 |
| EFNJBBKE_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EFNJBBKE_6 | 160593 | 168836 | False | Unknown | VOG0025, |
Phigaro v2.4.0 (Database: Jan. 2024 release)