Probiotic potential risk score


ARGs VFs PGs PPRS
6006.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
PMFHDHLO_1598362600308tet(Q)ARO:3000191tet(Q)97.8198.63Z21523.1
PMFHDHLO_53249250251175tet(Q)ARO:3000191tet(Q)89.3997.56Z21523.1
PMFHDHLO_23127245128135CblA-1ARO:3002999CblA-197.64100.00GQ343019.1
PMFHDHLO_1624243629Mef(En2)ARO:3004659Mef(En2)99.50100.00AF251288.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
PMFHDHLO_1598362600274tet(Q)Doxycycline, Tetracycline, Minocycline98.7599.33L33696
PMFHDHLO_21918419980erm(F)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S91.4799.50M17808

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
PMFHDHLO_1624273629mef(En2)macrolide efflux MFS transporter Mef(En2)BLASTX99.50100.00WP_063853729.1
PMFHDHLO_1618902399lnu(AN2)lincosamide nucleotidyltransferase Lnu(AN2)BLASTX99.41100.00WP_004308783.1
PMFHDHLO_1598362600275tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX97.9699.53WP_063856407.1
PMFHDHLO_23127245128132cblACblA family class A beta-lactamaseBLASTX97.64100.00WP_005827792.1
PMFHDHLO_53249250251172tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX89.86100.00WP_063856407.1
PMFHDHLO_21918319980erm(F)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)BLASTX89.85100.00WP_002682030.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
PMFHDHLO_368491429repUS2584 / 68180.48BFU30316

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
PMFHDHLO_10.01.00.0
PMFHDHLO_20.01.00.0
PMFHDHLO_30.01.00.0
PMFHDHLO_40.01.00.0
PMFHDHLO_50.01.00.0
PMFHDHLO_60.01.00.0
PMFHDHLO_70.01.00.0
PMFHDHLO_80.01.00.0
PMFHDHLO_90.01.00.0
PMFHDHLO_100.01.00.0
PMFHDHLO_110.01.00.0
PMFHDHLO_120.01.00.0
PMFHDHLO_130.01.00.0
PMFHDHLO_140.01.00.0
PMFHDHLO_151.00.01.0
PMFHDHLO_160.01.00.0
PMFHDHLO_171.00.01.0
PMFHDHLO_180.01.00.0
PMFHDHLO_190.01.00.0
PMFHDHLO_200.01.00.0
PMFHDHLO_211.00.01.0
PMFHDHLO_220.01.00.0
PMFHDHLO_230.01.00.0
PMFHDHLO_241.00.01.0
PMFHDHLO_250.01.00.0
PMFHDHLO_261.00.01.0
PMFHDHLO_271.00.01.0
PMFHDHLO_281.00.01.0
PMFHDHLO_291.00.01.0
PMFHDHLO_301.00.01.0
PMFHDHLO_310.01.00.0
PMFHDHLO_321.00.01.0
PMFHDHLO_331.00.01.0
PMFHDHLO_340.01.00.0
PMFHDHLO_351.00.01.0
PMFHDHLO_361.00.01.0
PMFHDHLO_370.01.00.0
PMFHDHLO_381.00.01.0
PMFHDHLO_391.00.01.0
PMFHDHLO_411.00.01.0
PMFHDHLO_421.00.01.0
PMFHDHLO_431.00.01.0
PMFHDHLO_441.00.01.0
PMFHDHLO_450.01.00.0
PMFHDHLO_530.01.00.0
PMFHDHLO_540.01.00.0
PMFHDHLO_550.01.00.0
PMFHDHLO_560.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
PMFHDHLO_34239911255629FalseSiphoviridaeVOG2788,

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements