Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOIDNOLC_25 | 235313 | 236215 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| IOIDNOLC_12 | 51289 | 53263 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IOIDNOLC_12 | 51337 | 53262 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| IOIDNOLC_25 | 235313 | 236215 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
| IOIDNOLC_13 | 8205 | 9001 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 91.47 | 99.50 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOIDNOLC_25 | 235313 | 236212 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| IOIDNOLC_12 | 51337 | 53259 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| IOIDNOLC_13 | 8205 | 9002 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IOIDNOLC_19 | 66 | 745 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IOIDNOLC_1 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_2 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_3 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_4 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_5 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_6 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_7 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_8 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_9 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_10 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_11 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_12 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_13 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_14 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_15 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_16 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_17 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_18 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_19 | 1.0 | 0.0 | 1.0 |
| IOIDNOLC_20 | 1.0 | 0.0 | 1.0 |
| IOIDNOLC_21 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_23 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_25 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_26 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_27 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_28 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_29 | 0.0 | 1.0 | 0.0 |
| IOIDNOLC_30 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IOIDNOLC_27 | 83502 | 91461 | False | Siphoviridae | VOG4556, |
| IOIDNOLC_29 | 12618 | 22134 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)