Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGJDPBJI_45 | 92109 | 92909 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| PGJDPBJI_83 | 31830 | 33755 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PGJDPBJI_27 | 272 | 2197 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PGJDPBJI_83 | 31830 | 33755 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PGJDPBJI_45 | 92109 | 92909 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGJDPBJI_83 | 31830 | 33752 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PGJDPBJI_45 | 92109 | 92906 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| PGJDPBJI_27 | 272 | 2194 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PGJDPBJI_16 | 2189 | 2769 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGJDPBJI_1 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_2 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_3 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_4 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_5 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_6 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_8 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_9 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_10 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_11 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_12 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_13 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_14 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_15 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_16 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_17 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_18 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_19 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_20 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_21 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_22 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_23 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_24 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_25 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_26 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_27 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_28 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_29 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_30 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_32 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_33 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_34 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_35 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_36 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_40 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_41 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_42 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_43 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_44 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_45 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_46 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_47 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_48 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_49 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_50 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_51 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_52 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_53 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_54 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_55 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_56 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_57 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_58 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_59 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_60 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_61 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_62 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_63 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_64 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_65 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_66 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_67 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_68 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_69 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_70 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_71 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_72 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_73 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_74 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_75 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_76 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_77 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_78 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_79 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_80 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_81 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_82 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_83 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_84 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_85 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_86 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_87 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_88 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_89 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_90 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_91 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_92 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_93 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_94 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_95 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_96 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_97 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_98 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_99 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_100 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_101 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_102 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_103 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_104 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_105 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_106 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_107 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_108 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_109 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_110 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_111 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_112 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_113 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_114 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_115 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_116 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_117 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_118 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_119 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_120 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_121 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_122 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_123 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_124 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_125 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_126 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_127 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_128 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_129 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_130 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_131 | 0.0 | 1.0 | 0.0 |
| PGJDPBJI_132 | 1.0 | 0.0 | 1.0 |
| PGJDPBJI_133 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGJDPBJI_2 | 119352 | 127464 | False | Siphoviridae | VOG7238, |
| PGJDPBJI_63 | 26569 | 36068 | True | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)