Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KIPOLNCM_12 | 328889 | 329854 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| KIPOLNCM_49 | 1450 | 3423 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| KIPOLNCM_51 | 1450 | 3423 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| KIPOLNCM_58 | 2 | 910 | ErmF | ARO:3000498 | ErmF | 98.50 | 113.53 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KIPOLNCM_12 | 328889 | 329854 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| KIPOLNCM_12 | 328889 | 329854 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| KIPOLNCM_12 | 328889 | 329854 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| KIPOLNCM_12 | 328889 | 329854 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| KIPOLNCM_49 | 1498 | 3423 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| KIPOLNCM_58 | 110 | 910 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KIPOLNCM_12 | 328892 | 329854 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| KIPOLNCM_49 | 1498 | 3420 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KIPOLNCM_51 | 1498 | 3420 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KIPOLNCM_58 | 110 | 907 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KIPOLNCM_15 | 66330 | 67910 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KIPOLNCM_1 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_2 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_3 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_4 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_5 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_6 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_7 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_8 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_9 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_10 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_11 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_12 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_13 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_14 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_15 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_16 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_17 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_18 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_19 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_20 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_21 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_22 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_23 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_24 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_25 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_26 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_27 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_28 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_29 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_30 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_31 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_32 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_33 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_34 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_35 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_36 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_37 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_38 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_39 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_40 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_41 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_42 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_43 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_44 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_45 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_46 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_47 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_48 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_49 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_50 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_51 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_52 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_53 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_54 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_55 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_56 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_57 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_58 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_59 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_60 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_61 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_62 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_63 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_64 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_65 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_66 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_67 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_68 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_69 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_70 | 1.0 | 0.0 | 1.0 |
| KIPOLNCM_75 | 0.0 | 1.0 | 0.0 |
| KIPOLNCM_76 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KIPOLNCM_12 | 330848 | 338940 | False | Siphoviridae | VOG4581, |
| KIPOLNCM_15 | 24797 | 34595 | True | Unknown | VOG9438, |
| KIPOLNCM_21 | 38373 | 53064 | False | Myoviridae | VOG0322, |
| KIPOLNCM_28 | 13454 | 21437 | False | Siphoviridae | VOG4544, |
Phigaro v2.4.0 (Database: Jan. 2024 release)