Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCAEPHCF_31 | 38961 | 40886 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| LCAEPHCF_30 | 30333 | 32258 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| LCAEPHCF_46 | 69 | 869 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCAEPHCF_30 | 30333 | 32258 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| LCAEPHCF_46 | 69 | 869 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCAEPHCF_12 | 255639 | 256544 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| LCAEPHCF_30 | 30333 | 32255 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| LCAEPHCF_46 | 72 | 869 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| LCAEPHCF_31 | 38964 | 40886 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LCAEPHCF_2 | 111868 | 113448 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCAEPHCF_1 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_2 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_3 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_4 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_5 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_6 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_7 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_8 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_9 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_10 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_11 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_12 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_13 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_14 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_15 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_16 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_17 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_18 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_19 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_20 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_21 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_22 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_23 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_24 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_25 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_26 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_27 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_28 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_29 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_30 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_31 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_32 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_33 | 1.0 | 0.0 | 1.0 |
| LCAEPHCF_34 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_35 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_36 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_37 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_38 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_39 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_40 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_41 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_42 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_43 | 1.0 | 0.0 | 1.0 |
| LCAEPHCF_44 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_45 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_46 | 1.0 | 0.0 | 1.0 |
| LCAEPHCF_47 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_48 | 1.0 | 0.0 | 1.0 |
| LCAEPHCF_49 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_50 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_51 | 1.0 | 0.0 | 1.0 |
| LCAEPHCF_52 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_53 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_54 | 1.0 | 0.0 | 1.0 |
| LCAEPHCF_55 | 1.0 | 0.0 | 1.0 |
| LCAEPHCF_56 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_57 | 1.0 | 0.0 | 1.0 |
| LCAEPHCF_58 | 1.0 | 0.0 | 1.0 |
| LCAEPHCF_63 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_64 | 0.0 | 1.0 | 0.0 |
| LCAEPHCF_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)