Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDIBIDJJ_49 | 3122 | 5095 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| EDIBIDJJ_64 | 1584 | 2810 | EreD | ARO:3004608 | EreD | 95.34 | 100.00 | KP265721.1 |
| EDIBIDJJ_64 | 520 | 1383 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| EDIBIDJJ_55 | 3 | 863 | ErmF | ARO:3000498 | ErmF | 98.50 | 107.52 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EDIBIDJJ_49 | 3122 | 5047 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| EDIBIDJJ_55 | 63 | 863 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| EDIBIDJJ_64 | 1584 | 2810 | ere(D) | Erythromycin | 96.66 | 100.00 | KP265721 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDIBIDJJ_64 | 520 | 1380 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| EDIBIDJJ_49 | 3125 | 5047 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| EDIBIDJJ_55 | 63 | 860 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| EDIBIDJJ_64 | 1587 | 2810 | ere(D) | EreD family erythromycin esterase | BLASTX | 95.34 | 100.00 | WP_015345560.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EDIBIDJJ_5 | 75830 | 74250 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EDIBIDJJ_68 | 2137 | 2717 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EDIBIDJJ_1 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_2 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_3 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_4 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_5 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_6 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_7 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_8 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_9 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_10 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_11 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_12 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_13 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_14 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_15 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_16 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_17 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_18 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_19 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_20 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_21 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_22 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_23 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_24 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_25 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_26 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_27 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_28 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_29 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_30 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_31 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_32 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_33 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_34 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_35 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_36 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_37 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_38 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_39 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_40 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_41 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_42 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_43 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_44 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_45 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_46 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_47 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_48 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_49 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_50 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_51 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_52 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_53 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_54 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_55 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_56 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_57 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_58 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_59 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_60 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_61 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_62 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_63 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_64 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_65 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_66 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_67 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_68 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_69 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_70 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_71 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_72 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_73 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_74 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_75 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_76 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_77 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_78 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_79 | 0.0 | 1.0 | 0.0 |
| EDIBIDJJ_80 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_81 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_82 | 1.0 | 0.0 | 1.0 |
| EDIBIDJJ_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EDIBIDJJ_1 | 281279 | 286632 | True | Myoviridae | VOG0469, |
Phigaro v2.4.0 (Database: Jan. 2024 release)