Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLICGGMG_32 | 36973 | 38898 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JLICGGMG_32 | 7886 | 8752 | ErmF | ARO:3000498 | ErmF | 98.50 | 108.27 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JLICGGMG_32 | 36973 | 38898 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| JLICGGMG_32 | 7886 | 8686 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLICGGMG_32 | 36976 | 38898 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| JLICGGMG_32 | 7889 | 8686 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JLICGGMG_1 | 381796 | 383376 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JLICGGMG_57 | 861 | 1441 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JLICGGMG_1 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_2 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_3 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_4 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_5 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_6 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_7 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_8 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_9 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_10 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_11 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_12 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_13 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_14 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_15 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_16 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_17 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_18 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_19 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_20 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_21 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_22 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_23 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_24 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_25 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_26 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_27 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_28 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_29 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_30 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_31 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_32 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_33 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_34 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_35 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_36 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_37 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_38 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_39 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_40 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_41 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_42 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_43 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_44 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_45 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_46 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_47 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_48 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_49 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_50 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_51 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_52 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_53 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_54 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_55 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_56 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_57 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_58 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_59 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_60 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_61 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_62 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_63 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_64 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_65 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_66 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_67 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_68 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_69 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_70 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_71 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_72 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_73 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_74 | 1.0 | 0.0 | 1.0 |
| JLICGGMG_78 | 0.0 | 1.0 | 0.0 |
| JLICGGMG_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)