Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHBHHDBH_23 | 328302 | 329507 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| JHBHHDBH_23 | 309453 | 310253 | ErmF | ARO:3000498 | ErmF | 98.12 | 100.00 | M17124.1 |
| JHBHHDBH_53 | 5512 | 7437 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JHBHHDBH_62 | 1321 | 2058 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JHBHHDBH_16 | 94366 | 95232 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| JHBHHDBH_62 | 1321 | 2058 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| JHBHHDBH_53 | 5512 | 7437 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| JHBHHDBH_23 | 309453 | 310253 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHBHHDBH_16 | 94369 | 95232 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| JHBHHDBH_54 | 6442 | 7347 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| JHBHHDBH_23 | 327768 | 328277 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JHBHHDBH_62 | 1324 | 2058 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| JHBHHDBH_53 | 5512 | 7434 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| JHBHHDBH_23 | 328305 | 329507 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| JHBHHDBH_23 | 309453 | 310250 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.50 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JHBHHDBH_1 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_2 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_3 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_4 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_5 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_6 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_7 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_8 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_9 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_10 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_11 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_12 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_13 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_14 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_15 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_16 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_17 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_18 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_19 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_20 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_21 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_22 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_23 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_24 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_25 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_26 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_27 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_28 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_29 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_30 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_31 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_32 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_33 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_34 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_35 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_36 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_37 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_38 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_39 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_40 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_41 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_42 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_43 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_44 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_45 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_46 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_47 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_48 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_49 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_50 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_51 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_52 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_53 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_54 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_56 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_57 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_58 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_59 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_60 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_61 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_62 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_63 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_64 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_65 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_66 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_67 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_68 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_70 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_71 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_72 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_73 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_74 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_75 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_76 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_77 | 1.0 | 0.0 | 1.0 |
| JHBHHDBH_78 | 0.0 | 1.0 | 0.0 |
| JHBHHDBH_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JHBHHDBH_20 | 13206 | 20750 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)