Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGINHKKM_16 | 105939 | 106739 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| PGINHKKM_2 | 80010 | 81935 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PGINHKKM_2 | 80010 | 81935 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PGINHKKM_16 | 105939 | 106739 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGINHKKM_2 | 80013 | 81935 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PGINHKKM_16 | 105942 | 106739 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGINHKKM_1 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_2 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_3 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_4 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_5 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_6 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_7 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_8 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_9 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_10 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_11 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_12 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_13 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_14 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_15 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_16 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_17 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_18 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_19 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_20 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_21 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_22 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_23 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_24 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_25 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_26 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_27 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_28 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_29 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_30 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_31 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_32 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_33 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_34 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_35 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_36 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_37 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_38 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_39 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_40 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_41 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_42 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_43 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_44 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_45 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_46 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_47 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_48 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_49 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_50 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_51 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_52 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_53 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_54 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_55 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_56 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_57 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_58 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_59 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_60 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_61 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_62 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_63 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_64 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_65 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_66 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_67 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_68 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_69 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_70 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_71 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_72 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_73 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_74 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_75 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_76 | 1.0 | 0.0 | 1.0 |
| PGINHKKM_77 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_78 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_79 | 0.0 | 1.0 | 0.0 |
| PGINHKKM_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGINHKKM_23 | 52434 | 57358 | False | Unknown | VOG0292, |
| PGINHKKM_23 | 223838 | 232030 | False | Unknown | VOG0572, |
| PGINHKKM_39 | 15092 | 27395 | False | Unknown | VOG5095, |
Phigaro v2.4.0 (Database: Jan. 2024 release)