Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJMBPDNF_35 | 31869 | 33794 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GJMBPDNF_56 | 1141 | 3066 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| GJMBPDNF_56 | 3 | 854 | ErmF | ARO:3000498 | ErmF | 98.50 | 106.39 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GJMBPDNF_35 | 31869 | 33794 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GJMBPDNF_56 | 54 | 854 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJMBPDNF_35 | 31872 | 33794 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GJMBPDNF_56 | 54 | 851 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| GJMBPDNF_56 | 1141 | 3063 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GJMBPDNF_1 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_2 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_3 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_4 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_5 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_6 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_7 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_8 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_9 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_10 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_11 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_12 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_13 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_14 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_15 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_16 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_17 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_18 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_19 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_20 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_21 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_22 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_23 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_24 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_25 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_26 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_27 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_28 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_29 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_30 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_31 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_32 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_33 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_34 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_35 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_36 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_37 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_38 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_39 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_40 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_41 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_42 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_43 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_44 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_45 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_46 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_47 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_48 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_49 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_50 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_51 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_52 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_53 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_54 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_55 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_56 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_57 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_58 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_59 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_60 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_61 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_62 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_63 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_64 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_65 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_66 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_68 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_69 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_70 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_71 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_72 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_73 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_74 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_75 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_76 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_77 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_78 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_79 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_80 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_81 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_82 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_83 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_85 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_86 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_87 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_88 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_89 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_90 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_91 | 1.0 | 0.0 | 1.0 |
| GJMBPDNF_92 | 0.0 | 1.0 | 0.0 |
| GJMBPDNF_93 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)