Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAFBNCEE_1 | 1011532 | 1013506 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| PAFBNCEE_7 | 270160 | 270657 | nimG | ARO:3007109 | nimG | 80.12 | 100.61 | NFLR01000029.1 |
| PAFBNCEE_2 | 139193 | 139993 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| PAFBNCEE_18 | 66490 | 67392 | CepA-44 | ARO:3006225 | CepA-44 | 99.00 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PAFBNCEE_1 | 1011532 | 1013457 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| PAFBNCEE_2 | 139193 | 139993 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| PAFBNCEE_18 | 66490 | 67392 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | U05887 |
| PAFBNCEE_7 | 270174 | 270654 | nimC | Metronidazole | 84.50 | 97.36 | X76948 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAFBNCEE_1 | 1011535 | 1013457 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| PAFBNCEE_2 | 139196 | 139993 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
| PAFBNCEE_18 | 66493 | 67392 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005816369.1 |
| PAFBNCEE_7 | 270172 | 270654 | nimC | 5-nitroimidazole reductase NimC | BLASTX | 81.37 | 98.77 | WP_063854491.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PAFBNCEE_34 | 1 | 644 | repUS2 | 646 / 681 | 98.76 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAFBNCEE_1 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_2 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_3 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_4 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_5 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_6 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_7 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_8 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_9 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_10 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_11 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_12 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_13 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_14 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_15 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_16 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_17 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_18 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_19 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_20 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_21 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_22 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_23 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_24 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_25 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_26 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_27 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_28 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_29 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_30 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_32 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_33 | 0.0 | 1.0 | 0.0 |
| PAFBNCEE_34 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_35 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_36 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_37 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_38 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_39 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_40 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_41 | 1.0 | 0.0 | 1.0 |
| PAFBNCEE_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)