Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LECFEHHK_179 | 75374 | 75177 | CspA | 2.41e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| LECFEHHK_179 | 75374 | 75180 | CspR | 1.05e-27 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LECFEHHK_1 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_2 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_3 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_4 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_5 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_13 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_24 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_35 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_46 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_57 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_68 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_79 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_90 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_101 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_112 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_113 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_124 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_135 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_146 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_157 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_168 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_175 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_176 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_177 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_178 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_179 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_180 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_181 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_182 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_183 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_184 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_185 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_186 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_187 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_188 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_189 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_190 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_191 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_192 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_193 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_194 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_195 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_196 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_197 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_198 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_199 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_200 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_201 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_202 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_203 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_204 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_205 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_206 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_207 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_208 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_209 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_210 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_211 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_212 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_213 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_214 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_215 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_216 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_217 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_218 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_219 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_220 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_221 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_222 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_223 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_224 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_225 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_226 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_227 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_228 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_229 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_230 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_231 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_233 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_234 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_235 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_236 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_237 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_238 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_239 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_240 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_241 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_242 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_243 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_244 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_245 | 0.0 | 1.0 | 0.0 |
| LECFEHHK_246 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_247 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_248 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_249 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_250 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_251 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_252 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_253 | 1.0 | 0.0 | 1.0 |
| LECFEHHK_254 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LECFEHHK_212 | 39426 | 79409 | False | Siphoviridae | VOG4615, VOG0703, VOG9091, VOG8917, VOG10223, VOG4856, VOG9997, VOG10972, VOG3462, VOG0801, VOG8263, VOG6698, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG1315, VOG0198, VOG1183, VOG0536, VOG0189, VOG8647, VOG0514, VOG0226, VOG0186, VOG1309, VOG9460 |
Phigaro v2.4.0 (Database: Jan. 2024 release)