Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BPKMPIEC_239 | 75374 | 75177 | CspA | 2.41e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| BPKMPIEC_239 | 75374 | 75180 | CspR | 1.05e-27 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BPKMPIEC_30 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_75 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_81 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_84 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_86 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_87 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_90 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_91 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_93 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_95 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_99 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_100 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_105 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_107 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_111 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_119 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_122 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_123 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_124 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_125 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_128 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_129 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_130 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_131 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_133 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_134 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_136 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_137 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_139 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_140 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_141 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_142 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_143 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_144 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_145 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_146 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_148 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_149 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_150 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_151 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_152 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_153 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_154 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_155 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_156 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_158 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_159 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_160 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_162 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_163 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_164 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_165 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_166 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_167 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_168 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_169 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_170 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_171 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_172 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_173 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_174 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_175 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_176 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_177 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_178 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_180 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_181 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_182 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_183 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_184 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_185 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_186 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_187 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_188 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_189 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_190 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_213 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_226 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_228 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_231 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_234 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_239 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_247 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_250 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_251 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_252 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_253 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_254 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_275 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_288 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_289 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_290 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_294 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_296 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_297 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_299 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_301 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_302 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_303 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_304 | 0.0 | 1.0 | 0.0 |
| BPKMPIEC_305 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_306 | 1.0 | 0.0 | 1.0 |
| BPKMPIEC_308 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BPKMPIEC_178 | 9214 | 49197 | False | Siphoviridae | VOG9460, VOG1309, VOG0186, VOG0226, VOG0514, VOG8647, VOG0189, VOG0536, VOG1183, VOG0198, VOG1315, VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG6698, VOG8263, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG10223, VOG8917, VOG9091, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)