Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCMPFOOA_45 | 44223 | 47786 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| HCMPFOOA_31 | 49 | 1989 | tet(W) | ARO:3000194 | tet(W) | 97.33 | 101.10 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HCMPFOOA_31 | 78 | 1989 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.11 | 99.58 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCMPFOOA_31 | 79 | 1989 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 100.00 | 99.69 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCMPFOOA_1 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_2 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_3 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_4 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_5 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_6 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_7 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_8 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_9 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_10 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_11 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_12 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_13 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_14 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_15 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_16 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_17 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_18 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_19 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_20 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_22 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_23 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_24 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_25 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_26 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_27 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_28 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_29 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_30 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_31 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_32 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_33 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_34 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_35 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_36 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_37 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_38 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_39 | 1.0 | 0.0 | 1.0 |
| HCMPFOOA_40 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_41 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_42 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_43 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_44 | 0.0 | 1.0 | 0.0 |
| HCMPFOOA_45 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCMPFOOA_17 | 8732 | 12863 | False | Siphoviridae | VOG1210, VOG4572, VOG4555 |
Phigaro v2.4.0 (Database: Jan. 2024 release)