Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IMCNGLGE_2 | 74420 | 74914 | dfrF | ARO:3002867 | dfrF | 100.00 | 100.00 | AF028812.1 |
| IMCNGLGE_28 | 49816 | 53379 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.31 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IMCNGLGE_2 | 74423 | 74914 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | EXACTX | 100.00 | 100.00 | WP_002322211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IMCNGLGE_1 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_2 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_3 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_4 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_5 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_6 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_7 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_8 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_9 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_10 | 1.0 | 0.0 | 1.0 |
| IMCNGLGE_11 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_12 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_13 | 1.0 | 0.0 | 1.0 |
| IMCNGLGE_15 | 1.0 | 0.0 | 1.0 |
| IMCNGLGE_16 | 1.0 | 0.0 | 1.0 |
| IMCNGLGE_17 | 1.0 | 0.0 | 1.0 |
| IMCNGLGE_18 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_19 | 1.0 | 0.0 | 1.0 |
| IMCNGLGE_20 | 1.0 | 0.0 | 1.0 |
| IMCNGLGE_21 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_22 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_23 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_24 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_25 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_26 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_27 | 0.0 | 1.0 | 0.0 |
| IMCNGLGE_28 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IMCNGLGE_7 | 9242 | 13373 | False | Siphoviridae | VOG2894, VOG4555, VOG4572, VOG1210 |
| IMCNGLGE_8 | 3935 | 17804 | False | Siphoviridae | VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG0880, VOG1581, VOG4621, VOG4557, VOG5793 |
| IMCNGLGE_22 | 198268 | 212231 | False | Siphoviridae | VOG9570, VOG9569, VOG9762, VOG5588, VOG5589, VOG5587, VOG4568, VOG4556, VOG4544, VOG9438, VOG3309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)