Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDHHPPEF_55 | 22630 | 26193 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| BDHHPPEF_72 | 1401 | 3320 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BDHHPPEF_72 | 1401 | 3320 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDHHPPEF_72 | 1401 | 3317 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BDHHPPEF_1 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_2 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_3 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_4 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_5 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_6 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_7 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_8 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_9 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_10 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_11 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_12 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_13 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_14 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_15 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_16 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_17 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_18 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_19 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_20 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_21 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_22 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_23 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_24 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_26 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_27 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_28 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_29 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_30 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_31 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_32 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_33 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_34 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_35 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_36 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_37 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_38 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_39 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_40 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_41 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_42 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_43 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_44 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_45 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_46 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_47 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_48 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_49 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_50 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_51 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_52 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_53 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_54 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_55 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_56 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_57 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_58 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_59 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_60 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_61 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_62 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_64 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_65 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_66 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_67 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_68 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_69 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_70 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_71 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_72 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_73 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_74 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_75 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_76 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_77 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_78 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_79 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_80 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_81 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_82 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_83 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_84 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_85 | 1.0 | 0.0 | 1.0 |
| BDHHPPEF_86 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_87 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_88 | 0.0 | 1.0 | 0.0 |
| BDHHPPEF_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BDHHPPEF_4 | 17720 | 43249 | False | Siphoviridae | VOG1125, VOG4545, VOG4557, VOG1581, VOG1887, VOG3434, VOG4555, VOG2806, VOG0720, VOG5101, VOG1574, VOG6459, VOG4841, VOG6495, VOG6357, VOG9502 |
Phigaro v2.4.0 (Database: Jan. 2024 release)