Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LHHGPNEB_9 | 526386 | 529712 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.64 | 100.09 | CP001840.1 |
| LHHGPNEB_10 | 227531 | 231214 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| LHHGPNEB_11 | 20206 | 22125 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LHHGPNEB_11 | 20206 | 22125 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LHHGPNEB_11 | 20206 | 22122 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LHHGPNEB_1 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_2 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_3 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_4 | 1.0 | 0.0 | 1.0 |
| LHHGPNEB_6 | 1.0 | 0.0 | 1.0 |
| LHHGPNEB_7 | 1.0 | 0.0 | 1.0 |
| LHHGPNEB_8 | 1.0 | 0.0 | 1.0 |
| LHHGPNEB_9 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_10 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_11 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_12 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_13 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_14 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_15 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_16 | 0.0 | 1.0 | 0.0 |
| LHHGPNEB_17 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LHHGPNEB_11 | 131733 | 147809 | False | Unknown | VOG0822, VOG4548, VOG2090, VOG0822, VOG4606, VOG0275, VOG10195, VOG6495 |
| LHHGPNEB_13 | 11415 | 17840 | False | Siphoviridae | VOG0189, VOG0189, VOG7140, VOG1246, VOG5532 |
| LHHGPNEB_14 | 131882 | 137709 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585 |
| LHHGPNEB_15 | 104645 | 126426 | False | Myoviridae | VOG5012, VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG11016, VOG4548, VOG0384 |
Phigaro v2.4.0 (Database: Jan. 2024 release)