Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LDHNOFLO_21 | 144667 | 148350 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 103.46 | NC_008618.1 |
| LDHNOFLO_25 | 89229 | 92555 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.37 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LDHNOFLO_1 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_2 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_3 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_4 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_5 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_6 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_7 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_8 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_9 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_10 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_11 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_12 | 1.0 | 0.0 | 1.0 |
| LDHNOFLO_14 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_15 | 1.0 | 0.0 | 1.0 |
| LDHNOFLO_16 | 1.0 | 0.0 | 1.0 |
| LDHNOFLO_17 | 1.0 | 0.0 | 1.0 |
| LDHNOFLO_18 | 1.0 | 0.0 | 1.0 |
| LDHNOFLO_19 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_20 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_21 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_22 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_23 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_24 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_25 | 0.0 | 1.0 | 0.0 |
| LDHNOFLO_26 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LDHNOFLO_11 | 72104 | 76651 | False | Unknown | VOG0585, VOG3304, VOG0010 |
| LDHNOFLO_24 | 11517 | 32140 | False | Myoviridae | VOG0384, VOG4548, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
| LDHNOFLO_26 | 4753 | 14465 | False | Siphoviridae | VOG5466, VOG2021, VOG6371, VOG0731, VOG0944, VOG0189, VOG9444 |
| LDHNOFLO_26 | 22194 | 24208 | False | Unknown | VOG1837 |
| LDHNOFLO_26 | 64992 | 86941 | False | Siphoviridae | VOG0992, VOG0136, VOG0991, VOG0275, VOG3654, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG0880, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574, VOG0183, VOG1422, VOG9852 |
Phigaro v2.4.0 (Database: Jan. 2024 release)