Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DGPDAFNI_28 | 164208 | 167534 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.55 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DGPDAFNI_1 | 71067 | 71830 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.61 | 100.00 | U21300 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DGPDAFNI_1 | 71067 | 71594 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | PARTIALX | 98.86 | 69.57 | WP_011116967.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DGPDAFNI_1 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_2 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_3 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_4 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_5 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_6 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_7 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_8 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_9 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_10 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_11 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_12 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_13 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_14 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_15 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_16 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_17 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_18 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_19 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_20 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_22 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_23 | 1.0 | 0.0 | 1.0 |
| DGPDAFNI_24 | 1.0 | 0.0 | 1.0 |
| DGPDAFNI_25 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_26 | 1.0 | 0.0 | 1.0 |
| DGPDAFNI_27 | 1.0 | 0.0 | 1.0 |
| DGPDAFNI_28 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_29 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_30 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_31 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_32 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_33 | 0.0 | 1.0 | 0.0 |
| DGPDAFNI_34 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DGPDAFNI_22 | 229372 | 237339 | False | Siphoviridae | VOG4944, VOG1229, VOG2218, VOG4600, VOG1309, VOG0226, VOG1243 |
| DGPDAFNI_22 | 238039 | 259917 | False | Siphoviridae | VOG10890, VOG6005, VOG2038, VOG1422, VOG1574, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG1581, VOG3409, VOG2638, VOG4621, VOG4557, VOG3651, VOG4582, VOG4545, VOG2624, VOG6384, VOG0275 |
| DGPDAFNI_30 | 105234 | 127334 | False | Myoviridae | VOG5012, VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG4548, VOG0384 |
| DGPDAFNI_31 | 43129 | 50815 | False | Siphoviridae | VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)