Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EPKCPHCN_26 | 4838 | 8164 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.55 | 100.09 | CP001840.1 |
| EPKCPHCN_64 | 3649 | 7332 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EPKCPHCN_8 | 53739 | 54502 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.61 | 100.00 | U21300 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EPKCPHCN_8 | 53975 | 54502 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | PARTIALX | 98.86 | 69.57 | WP_011116967.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EPKCPHCN_4 | 1.0 | 0.0 | 1.0 |
| EPKCPHCN_5 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_6 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_8 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_9 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_10 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_11 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_12 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_13 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_14 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_15 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_16 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_17 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_18 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_19 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_20 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_21 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_22 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_23 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_24 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_25 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_26 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_27 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_28 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_29 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_30 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_31 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_32 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_33 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_34 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_35 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_36 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_37 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_38 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_39 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_40 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_41 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_42 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_43 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_44 | 1.0 | 0.0 | 1.0 |
| EPKCPHCN_45 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_46 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_47 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_48 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_49 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_50 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_51 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_52 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_53 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_54 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_55 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_56 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_57 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_58 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_59 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_60 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_61 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_62 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_63 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_64 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_65 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_66 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_67 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_68 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_69 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_70 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_71 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_72 | 1.0 | 0.0 | 1.0 |
| EPKCPHCN_73 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_74 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_75 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_76 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_77 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_78 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_79 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_80 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_81 | 1.0 | 0.0 | 1.0 |
| EPKCPHCN_82 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_83 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_84 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_85 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_86 | 1.0 | 0.0 | 1.0 |
| EPKCPHCN_88 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_89 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_90 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_91 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_92 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_93 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_94 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_95 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_96 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_97 | 1.0 | 0.0 | 1.0 |
| EPKCPHCN_98 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_99 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_100 | 1.0 | 0.0 | 1.0 |
| EPKCPHCN_101 | 1.0 | 0.0 | 1.0 |
| EPKCPHCN_102 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_103 | 0.0 | 1.0 | 0.0 |
| EPKCPHCN_104 | 1.0 | 0.0 | 1.0 |
| EPKCPHCN_105 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EPKCPHCN_17 | 14297 | 20532 | False | Siphoviridae | VOG4602, VOG4944, VOG1229, VOG2218, VOG4600, VOG1309, VOG0226 |
| EPKCPHCN_18 | 105234 | 127809 | False | Myoviridae | VOG5012, VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG4548, VOG0384, VOG2484 |
| EPKCPHCN_23 | 10912 | 16745 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585 |
Phigaro v2.4.0 (Database: Jan. 2024 release)