Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHAMCHID_8 | 33800 | 37432 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 102.02 | NC_008618.1 |
| CHAMCHID_12 | 19639 | 22965 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.55 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHAMCHID_10 | 71045 | 71808 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.61 | 100.00 | U21300 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHAMCHID_10 | 71045 | 71572 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | PARTIALX | 98.86 | 69.57 | WP_011116967.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHAMCHID_1 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_2 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_4 | 1.0 | 0.0 | 1.0 |
| CHAMCHID_5 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_6 | 1.0 | 0.0 | 1.0 |
| CHAMCHID_7 | 1.0 | 0.0 | 1.0 |
| CHAMCHID_8 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_9 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_10 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_11 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_12 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_13 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_14 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_15 | 0.0 | 1.0 | 0.0 |
| CHAMCHID_16 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHAMCHID_8 | 230630 | 249042 | False | Siphoviridae | VOG4728, VOG0275, VOG6384, VOG2624, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG2638, VOG3409, VOG1581, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574 |
| CHAMCHID_8 | 255461 | 261174 | False | Siphoviridae | VOG0226, VOG1309, VOG4600, VOG2218, VOG1229 |
| CHAMCHID_10 | 191082 | 198768 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075 |
| CHAMCHID_14 | 12085 | 34186 | False | Myoviridae | VOG2484, VOG0384, VOG4548, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)