Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGIFOOCA_2 | 535102 | 538734 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 102.02 | NC_008618.1 |
| PGIFOOCA_4 | 19691 | 23017 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.46 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGIFOOCA_1 | 1.0 | 0.0 | 1.0 |
| PGIFOOCA_2 | 0.0 | 1.0 | 0.0 |
| PGIFOOCA_3 | 0.0 | 1.0 | 0.0 |
| PGIFOOCA_4 | 0.0 | 1.0 | 0.0 |
| PGIFOOCA_5 | 0.0 | 1.0 | 0.0 |
| PGIFOOCA_6 | 0.0 | 1.0 | 0.0 |
| PGIFOOCA_7 | 0.0 | 1.0 | 0.0 |
| PGIFOOCA_8 | 0.0 | 1.0 | 0.0 |
| PGIFOOCA_9 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGIFOOCA_2 | 731546 | 750325 | False | Siphoviridae | VOG4728, VOG0275, VOG8699, VOG2624, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG2638, VOG3409, VOG1581, VOG0880, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574, VOG0183 |
| PGIFOOCA_3 | 146277 | 156843 | False | Myoviridae | VOG2842, VOG4571, VOG0275, VOG3594, VOG4602, VOG5277, VOG5858, VOG2215 |
| PGIFOOCA_3 | 160674 | 188996 | False | Siphoviridae | VOG0226, VOG1931, VOG4566, VOG5782, VOG0943, VOG2538, VOG2038, VOG2545, VOG0376, VOG4841, VOG9852, VOG2560, VOG5101, VOG0720, VOG4576, VOG4553, VOG0880, VOG1581, VOG5601, VOG5793, VOG4605, VOG4599, VOG5372, VOG0991 |
| PGIFOOCA_3 | 450800 | 468751 | True | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075, VOG2090, VOG8440, VOG5532, VOG0944, VOG3622, VOG3479, VOG4585, VOG0275 |
| PGIFOOCA_3 | 535849 | 557626 | False | Myoviridae | VOG0384, VOG4548, VOG11016, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)