Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPIJPHCI_98 | 120586 | 121323 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| IPIJPHCI_98 | 116259 | 117698 | AAC(6')-Ie-APH(2'')-Ia bifunctional protein | ARO:3002597 | AAC6_Ie_APH2_Ia | 100.00 | 100.00 | GU565967.1 |
| IPIJPHCI_55 | 80175 | 82094 | tet(O) | ARO:3000190 | tet(O) | 93.74 | 100.00 | M18896.2 |
| IPIJPHCI_55 | 78904 | 80124 | tet(40) | ARO:3000567 | tet(40) | 99.51 | 100.00 | AM419751.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IPIJPHCI_98 | 116259 | 117698 | aac(6')-aph(2'') | Gentamicin, Tobramycin, Netilmicin, Kanamycin, Amikacin, Dibekacin, Isepamicin, Fortimicin, Streptomycin | 100.00 | 100.00 | M13771 |
| IPIJPHCI_98 | 120586 | 121323 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U86375 |
| IPIJPHCI_55 | 78904 | 80124 | tet(40) | Doxycycline, Tetracycline | 99.84 | 100.00 | AM419751 |
| IPIJPHCI_55 | 80175 | 82094 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.74 | 100.00 | AIOQ01000025 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPIJPHCI_98 | 116262 | 117698 | aac(6')-Ie/aph(2'')-Ia | bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia | EXACTX | 100.00 | 100.00 | WP_001028144.1 |
| IPIJPHCI_98 | 120589 | 121323 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038790.1 |
| IPIJPHCI_55 | 78907 | 80124 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_015573055.1 |
| IPIJPHCI_55 | 80178 | 82094 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 94.05 | 100.00 | WP_012669445.1 |
| IPIJPHCI_25 | 26341 | 26541 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IPIJPHCI_33 | 48529 | 50172 | CdPpiB (CD630_00330) | 0.0 | cyclophilin-type peptidyl-prolyl-cis/trans-isomerase | 80.47 | 100.00 | CAJ66847 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IPIJPHCI_98 | 118100 | 119590 | rep1 | 1491 / 1491 | 99.93 | AE016833 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IPIJPHCI_1 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_2 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_3 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_4 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_5 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_6 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_7 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_8 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_9 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_10 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_11 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_12 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_13 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_14 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_15 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_16 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_17 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_18 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_19 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_20 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_21 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_22 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_23 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_24 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_25 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_26 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_27 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_28 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_29 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_30 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_31 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_32 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_33 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_34 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_35 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_36 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_37 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_38 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_39 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_40 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_41 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_42 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_43 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_44 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_45 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_46 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_47 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_48 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_49 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_50 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_51 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_53 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_54 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_55 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_56 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_57 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_58 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_59 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_60 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_61 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_62 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_63 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_64 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_65 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_66 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_68 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_69 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_70 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_71 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_73 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_74 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_75 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_76 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_77 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_78 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_80 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_82 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_83 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_84 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_85 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_86 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_88 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_89 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_90 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_91 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_92 | 0.0 | 1.0 | 0.0 |
| IPIJPHCI_93 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_94 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_95 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_96 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_97 | 1.0 | 0.0 | 1.0 |
| IPIJPHCI_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)