Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIFKKMLO_43 | 9409 | 10146 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| CIFKKMLO_73 | 8924 | 10144 | tet(40) | ARO:3000567 | tet(40) | 97.29 | 100.00 | AM419751.1 |
| CIFKKMLO_73 | 6864 | 8783 | tet(O) | ARO:3000190 | tet(O) | 97.50 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CIFKKMLO_43 | 10511 | 11761 | cfr(C) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 100.00 | 100.00 | CANB01000378 |
| CIFKKMLO_43 | 9409 | 10146 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | JN899585 |
| CIFKKMLO_73 | 8924 | 10144 | tet(40) | Doxycycline, Tetracycline | 99.34 | 100.00 | FJ158002 |
| CIFKKMLO_73 | 6864 | 8783 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIFKKMLO_43 | 9409 | 10143 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002321849.1 |
| CIFKKMLO_73 | 6864 | 8780 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
| CIFKKMLO_73 | 8924 | 10141 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 98.52 | 100.00 | WP_009247026.1 |
| CIFKKMLO_43 | 10511 | 11599 | cfr(C) | 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(C) | BLASTX | 97.25 | 95.78 | WP_111690898.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CIFKKMLO_1 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_2 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_3 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_4 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_5 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_6 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_7 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_8 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_9 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_10 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_11 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_12 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_13 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_14 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_15 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_16 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_17 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_18 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_19 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_20 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_21 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_22 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_24 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_25 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_26 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_27 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_28 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_29 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_30 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_31 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_32 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_33 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_34 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_35 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_38 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_39 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_40 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_42 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_43 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_44 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_45 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_46 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_47 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_48 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_49 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_50 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_51 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_52 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_53 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_54 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_55 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_56 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_57 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_58 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_59 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_60 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_61 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_62 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_63 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_64 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_65 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_66 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_67 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_68 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_69 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_70 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_71 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_72 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_73 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_74 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_75 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_76 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_77 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_78 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_79 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_80 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_81 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_82 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_83 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_84 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_85 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_86 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_87 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_88 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_89 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_90 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_91 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_92 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_93 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_94 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_95 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_96 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_97 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_98 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_99 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_100 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_101 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_102 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_103 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_104 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_105 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_106 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_107 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_108 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_109 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_110 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_111 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_112 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_113 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_114 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_115 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_116 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_117 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_118 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_119 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_120 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_121 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_122 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_123 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_124 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_125 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_126 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_127 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_128 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_129 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_130 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_131 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_132 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_134 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_135 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_136 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_137 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_138 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_139 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_140 | 0.0 | 1.0 | 0.0 |
| CIFKKMLO_141 | 1.0 | 0.0 | 1.0 |
| CIFKKMLO_142 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CIFKKMLO_43 | 6304 | 10145 | False | Siphoviridae | VOG8360, |
| CIFKKMLO_67 | 29610 | 37781 | True | Unknown | VOG0221, |
Phigaro v2.4.0 (Database: Jan. 2024 release)