Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 0 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDGKGFNE_38 | 43548 | 47108 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DDGKGFNE_23 | 1856 | 2596 | tia | 0.0 | Tia/Hek | Invasion | 99.86 | 100.00 | WP_001045028 |
| DDGKGFNE_11 | 1 | 469 | aec24 | 0.0 | ACE T6SS | Effector delivery system | 99.79 | 89.33 | WP_001013428 |
| DDGKGFNE_23 | 1856 | 2611 | hek | 0.0 | Tia/Hek | Invasion | 99.34 | 100.00 | AAK73174 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDGKGFNE_23 | 1856 | 2596 | virulence_ecoli | hra | Heat-resistant agglutinin | 99.87 | 100.00 | CP040456 |
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DDGKGFNE_1 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_2 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_3 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_4 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_5 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_6 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_7 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_8 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_9 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_10 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_11 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_12 | 1.0 | 0.0 | 1.0 |
| DDGKGFNE_13 | 1.0 | 0.0 | 1.0 |
| DDGKGFNE_14 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_17 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_18 | 1.0 | 0.0 | 1.0 |
| DDGKGFNE_19 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_20 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_21 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_22 | 1.0 | 0.0 | 1.0 |
| DDGKGFNE_23 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_24 | 1.0 | 0.0 | 1.0 |
| DDGKGFNE_25 | 1.0 | 0.0 | 1.0 |
| DDGKGFNE_26 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_28 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_29 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_30 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_31 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_32 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_33 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_34 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_35 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_36 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_37 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_38 | 0.0 | 1.0 | 0.0 |
| DDGKGFNE_41 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DDGKGFNE_1 | 2973 | 19934 | False | Siphoviridae | VOG4545, VOG4557, VOG4589, VOG1581, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG3028, VOG2038, VOG0686, VOG4564, VOG8486, VOG2538 |
| DDGKGFNE_1 | 28456 | 40517 | False | Siphoviridae | VOG4602, VOG0275, VOG4495, VOG0026, VOG0753 |
| DDGKGFNE_35 | 44730 | 55763 | False | Siphoviridae | VOG9438, VOG4544, VOG4556, VOG4568, VOG5587, VOG5589, VOG5588, VOG5793 |
Phigaro v2.4.0 (Database: Jan. 2024 release)