Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGLBMJCF_62 | 5145 | 8705 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.31 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CGLBMJCF_15 | 20 | 474 | repUS2 | 457 / 681 | 80.74 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGLBMJCF_1 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_2 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_3 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_4 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_5 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_6 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_7 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_8 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_9 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_10 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_11 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_12 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_13 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_14 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_15 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_16 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_17 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_18 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_19 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_20 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_21 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_22 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_23 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_24 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_25 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_26 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_27 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_28 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_29 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_30 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_31 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_32 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_33 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_34 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_35 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_36 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_37 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_38 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_39 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_40 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_41 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_42 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_43 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_44 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_45 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_46 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_47 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_48 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_50 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_51 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_52 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_53 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_54 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_55 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_56 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_57 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_58 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_59 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_60 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_61 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_62 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_65 | 1.0 | 0.0 | 1.0 |
| CGLBMJCF_66 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_67 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_69 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_70 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_72 | 0.0 | 1.0 | 0.0 |
| CGLBMJCF_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGLBMJCF_19 | 258687 | 271280 | False | Siphoviridae | VOG1210, VOG4572, VOG4555, VOG2894, VOG0720, VOG5101, VOG1574, VOG2038, VOG4559, VOG9895 |
| CGLBMJCF_28 | 83271 | 111819 | False | Siphoviridae | VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG3409, VOG1159, VOG2639, VOG4557, VOG4582, VOG5793, VOG4605, VOG4599, VOG0933, VOG0979, VOG3298, VOG7888, VOG9502, VOG0731, VOG0267, VOG0275 |
Phigaro v2.4.0 (Database: Jan. 2024 release)