Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCBCJBPC_16 | 64853 | 68413 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.31 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCBCJBPC_1 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_2 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_3 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_4 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_5 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_6 | 1.0 | 0.0 | 1.0 |
| HCBCJBPC_7 | 1.0 | 0.0 | 1.0 |
| HCBCJBPC_8 | 1.0 | 0.0 | 1.0 |
| HCBCJBPC_9 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_12 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_13 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_14 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_15 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_16 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_17 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_18 | 0.0 | 1.0 | 0.0 |
| HCBCJBPC_19 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCBCJBPC_3 | 4696 | 14916 | False | Siphoviridae | VOG4559, VOG2038, VOG1574, VOG5101, VOG0720, VOG2894, VOG4555, VOG4572, VOG1210 |
| HCBCJBPC_9 | 11856 | 23339 | False | Siphoviridae | VOG1887, VOG3434, VOG9853, VOG2806, VOG0720, VOG5101, VOG1574, VOG6459, VOG4841 |
| HCBCJBPC_9 | 40003 | 47474 | False | Myoviridae / Siphoviridae | VOG5782, VOG2666, VOG8271, VOG1243, VOG0226, VOG1309, VOG7145, VOG0686 |
Phigaro v2.4.0 (Database: Jan. 2024 release)