Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHEHCBFB_90 | 120594 | 121331 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| NHEHCBFB_90 | 116267 | 117706 | AAC(6')-Ie-APH(2'')-Ia bifunctional protein | ARO:3002597 | AAC6_Ie_APH2_Ia | 100.00 | 100.00 | GU565967.1 |
| NHEHCBFB_57 | 80274 | 82193 | tet(O) | ARO:3000190 | tet(O) | 93.74 | 100.00 | M18896.2 |
| NHEHCBFB_57 | 79003 | 80223 | tet(40) | ARO:3000567 | tet(40) | 99.51 | 100.00 | AM419751.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NHEHCBFB_90 | 116267 | 117706 | aac(6')-aph(2'') | Gentamicin, Tobramycin, Netilmicin, Kanamycin, Amikacin, Dibekacin, Isepamicin, Fortimicin, Streptomycin | 100.00 | 100.00 | M13771 |
| NHEHCBFB_90 | 120594 | 121331 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U86375 |
| NHEHCBFB_57 | 79003 | 80223 | tet(40) | Doxycycline, Tetracycline | 99.84 | 100.00 | AM419751 |
| NHEHCBFB_57 | 80274 | 82193 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.74 | 100.00 | AIOQ01000025 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHEHCBFB_90 | 116270 | 117706 | aac(6')-Ie/aph(2'')-Ia | bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia | EXACTX | 100.00 | 100.00 | WP_001028144.1 |
| NHEHCBFB_90 | 120597 | 121331 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038790.1 |
| NHEHCBFB_57 | 79006 | 80223 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_015573055.1 |
| NHEHCBFB_57 | 80277 | 82193 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 94.05 | 100.00 | WP_012669445.1 |
| NHEHCBFB_25 | 26341 | 26541 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NHEHCBFB_35 | 48671 | 50314 | CdPpiB (CD630_00330) | 0.0 | cyclophilin-type peptidyl-prolyl-cis/trans-isomerase | 80.47 | 100.00 | CAJ66847 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NHEHCBFB_90 | 118108 | 119598 | rep1 | 1491 / 1491 | 99.93 | AE016833 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NHEHCBFB_2 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_3 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_4 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_5 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_6 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_7 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_8 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_9 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_10 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_11 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_12 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_13 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_14 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_15 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_16 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_17 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_18 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_19 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_20 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_21 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_22 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_23 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_24 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_25 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_26 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_27 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_28 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_29 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_30 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_31 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_32 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_33 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_34 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_35 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_36 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_37 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_38 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_39 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_40 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_41 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_42 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_43 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_44 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_45 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_46 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_47 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_48 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_49 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_50 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_51 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_52 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_53 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_54 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_55 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_56 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_57 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_58 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_60 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_61 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_62 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_63 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_64 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_65 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_66 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_67 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_68 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_69 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_70 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_71 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_72 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_73 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_74 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_75 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_76 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_77 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_78 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_79 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_80 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_81 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_82 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_83 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_85 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_86 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_87 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_88 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_89 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_90 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_92 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_93 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_94 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_95 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_96 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_97 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_98 | 1.0 | 0.0 | 1.0 |
| NHEHCBFB_99 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_100 | 0.0 | 1.0 | 0.0 |
| NHEHCBFB_101 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)