Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHHHLHLN_32 | 46836 | 48755 | tet(O) | ARO:3000190 | tet(O) | 99.22 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OHHHLHLN_32 | 46836 | 48755 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.69 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHHHLHLN_32 | 46839 | 48755 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.53 | 100.00 | WP_044666383.1 |
| OHHHLHLN_18 | 93047 | 93247 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OHHHLHLN_19 | 1144 | 689 | tnpA | 1.74e-106 | regulatory RNA/ transposase for IS200 | 95.39 | 100.00 | AKH06467 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OHHHLHLN_94 | 2236 | 2437 | Col8282 | 202 / 207 | 89.60 | DQ995352 |
| OHHHLHLN_25 | 186 | 316 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OHHHLHLN_1 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_3 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_4 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_5 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_7 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_8 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_9 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_10 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_11 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_12 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_13 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_14 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_15 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_16 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_17 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_18 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_19 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_20 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_21 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_22 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_23 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_24 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_25 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_26 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_28 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_29 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_30 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_31 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_32 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_33 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_34 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_35 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_36 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_37 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_38 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_39 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_40 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_41 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_42 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_43 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_44 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_45 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_46 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_47 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_48 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_49 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_50 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_51 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_52 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_53 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_54 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_55 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_56 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_57 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_58 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_59 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_60 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_61 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_62 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_63 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_64 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_65 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_66 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_67 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_68 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_69 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_70 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_71 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_72 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_73 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_74 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_75 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_76 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_77 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_78 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_79 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_80 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_81 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_82 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_83 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_84 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_85 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_86 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_87 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_88 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_89 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_90 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_91 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_92 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_93 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_94 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_95 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_96 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_97 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_98 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_99 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_101 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_102 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_104 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_105 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_106 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_107 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_108 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_109 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_110 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_111 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_112 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_113 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_114 | 0.0 | 1.0 | 0.0 |
| OHHHLHLN_115 | 1.0 | 0.0 | 1.0 |
| OHHHLHLN_116 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)