Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOOAIFGK_88 | 120586 | 121323 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| IOOAIFGK_88 | 116259 | 117698 | AAC(6')-Ie-APH(2'')-Ia bifunctional protein | ARO:3002597 | AAC6_Ie_APH2_Ia | 100.00 | 100.00 | GU565967.1 |
| IOOAIFGK_44 | 80275 | 82194 | tet(O) | ARO:3000190 | tet(O) | 93.74 | 100.00 | M18896.2 |
| IOOAIFGK_44 | 79004 | 80224 | tet(40) | ARO:3000567 | tet(40) | 99.51 | 100.00 | AM419751.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IOOAIFGK_88 | 116259 | 117698 | aac(6')-aph(2'') | Gentamicin, Tobramycin, Netilmicin, Kanamycin, Amikacin, Dibekacin, Isepamicin, Fortimicin, Streptomycin | 100.00 | 100.00 | M13771 |
| IOOAIFGK_88 | 120586 | 121323 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U86375 |
| IOOAIFGK_44 | 79004 | 80224 | tet(40) | Doxycycline, Tetracycline | 99.84 | 100.00 | AM419751 |
| IOOAIFGK_44 | 80275 | 82194 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.74 | 100.00 | AIOQ01000025 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOOAIFGK_88 | 116262 | 117698 | aac(6')-Ie/aph(2'')-Ia | bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia | EXACTX | 100.00 | 100.00 | WP_001028144.1 |
| IOOAIFGK_88 | 120589 | 121323 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038790.1 |
| IOOAIFGK_44 | 79007 | 80224 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_015573055.1 |
| IOOAIFGK_44 | 80278 | 82194 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 94.05 | 100.00 | WP_012669445.1 |
| IOOAIFGK_25 | 26341 | 26541 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IOOAIFGK_33 | 48936 | 50579 | CdPpiB (CD630_00330) | 0.0 | cyclophilin-type peptidyl-prolyl-cis/trans-isomerase | 80.47 | 100.00 | CAJ66847 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IOOAIFGK_88 | 118100 | 119590 | rep1 | 1491 / 1491 | 99.93 | AE016833 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IOOAIFGK_1 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_2 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_3 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_4 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_5 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_6 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_7 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_8 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_9 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_10 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_11 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_12 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_13 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_14 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_15 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_16 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_17 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_18 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_19 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_20 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_21 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_22 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_23 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_24 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_25 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_26 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_27 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_28 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_29 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_30 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_31 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_32 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_33 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_34 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_35 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_36 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_37 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_38 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_39 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_40 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_41 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_42 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_43 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_44 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_45 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_46 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_47 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_48 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_49 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_50 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_52 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_53 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_54 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_55 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_56 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_57 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_58 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_59 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_60 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_61 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_62 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_63 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_64 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_65 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_66 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_67 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_68 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_69 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_70 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_71 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_72 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_73 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_74 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_75 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_76 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_77 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_78 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_79 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_80 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_81 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_82 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_83 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_85 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_86 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_87 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_88 | 0.0 | 1.0 | 0.0 |
| IOOAIFGK_89 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_90 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_91 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_92 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_94 | 1.0 | 0.0 | 1.0 |
| IOOAIFGK_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)