Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMKCMDIK_33 | 185856 | 185152 | WalR | 1.63e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PMKCMDIK_2 | 91540 | 91346 | CspR | 4.35e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PMKCMDIK_2 | 91540 | 91343 | CspA | 6.68e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PMKCMDIK_29 | 3741 | 4675 | rep28 | 941 / 930 | 82.68 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMKCMDIK_1 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_2 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_3 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_4 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_5 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_6 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_7 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_8 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_9 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_10 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_11 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_12 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_13 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_14 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_15 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_16 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_17 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_18 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_19 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_20 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_21 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_22 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_23 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_24 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_25 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_26 | 1.0 | 0.0 | 1.0 |
| PMKCMDIK_27 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_28 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_29 | 1.0 | 0.0 | 1.0 |
| PMKCMDIK_30 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_31 | 1.0 | 0.0 | 1.0 |
| PMKCMDIK_33 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_34 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_36 | 1.0 | 0.0 | 1.0 |
| PMKCMDIK_37 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_39 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_40 | 1.0 | 0.0 | 1.0 |
| PMKCMDIK_41 | 1.0 | 0.0 | 1.0 |
| PMKCMDIK_42 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_43 | 1.0 | 0.0 | 1.0 |
| PMKCMDIK_44 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_45 | 1.0 | 0.0 | 1.0 |
| PMKCMDIK_46 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_47 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_48 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_49 | 0.0 | 1.0 | 0.0 |
| PMKCMDIK_50 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMKCMDIK_4 | 67290 | 91489 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG0422, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720 |
| PMKCMDIK_6 | 782 | 25847 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG5616, VOG0198 |
| PMKCMDIK_12 | 30242 | 50071 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG9583, VOG1320, VOG4713, VOG4711, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0638 |
| PMKCMDIK_21 | 17168 | 19876 | False | Unknown | VOG9667, VOG3622, VOG3547, VOG3549, VOG0650 |
| PMKCMDIK_24 | 709 | 19504 | False | Siphoviridae | VOG4334, VOG4626, VOG1637, VOG3463, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG0692, VOG0691 |
Phigaro v2.4.0 (Database: Jan. 2024 release)