Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MKOOJEBI_11 | 451233 | 450529 | WalR | 3.13e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| MKOOJEBI_7 | 57567 | 57373 | CspR | 2.85e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MKOOJEBI_7 | 57567 | 57370 | CspA | 4.37e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MKOOJEBI_1 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_2 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_3 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_4 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_5 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_6 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_7 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_8 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_9 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_10 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_11 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_12 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_13 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_14 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_15 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_16 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_17 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_18 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_19 | 1.0 | 0.0 | 1.0 |
| MKOOJEBI_20 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_21 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_22 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_23 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_27 | 1.0 | 0.0 | 1.0 |
| MKOOJEBI_28 | 1.0 | 0.0 | 1.0 |
| MKOOJEBI_29 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_30 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_31 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_32 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_33 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_34 | 0.0 | 1.0 | 0.0 |
| MKOOJEBI_35 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MKOOJEBI_11 | 452152 | 459647 | False | Siphoviridae | VOG8908, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581 |
| MKOOJEBI_12 | 4159 | 33924 | False | Siphoviridae | VOG1063, VOG0866, VOG0054, VOG0753, VOG4918, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4599, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG3699, VOG2124, VOG4694, VOG0198 |
| MKOOJEBI_17 | 2892 | 21227 | False | Siphoviridae | VOG0181, VOG2786, VOG9667, VOG4602, VOG4489, VOG9231, VOG7508, VOG4122, VOG0985, VOG3346, VOG0275, VOG6422, VOG0198, VOG0204, VOG4553, VOG4556, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841 |
| MKOOJEBI_22 | 247277 | 274516 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG4566 |
| MKOOJEBI_29 | 329671 | 333275 | False | Siphoviridae | VOG4602, VOG6495, VOG9667, VOG1638, VOG11003, VOG6495 |
| MKOOJEBI_35 | 100421 | 123061 | False | Siphoviridae | VOG1637, VOG8294, VOG9657, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG3699, VOG9846 |
Phigaro v2.4.0 (Database: Jan. 2024 release)