Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AFAFIIAE_84 | 28802 | 28098 | WalR | 6.81e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| AFAFIIAE_53 | 6263 | 6066 | CspR | 4.14e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AFAFIIAE_1 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_2 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_3 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_4 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_5 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_6 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_7 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_8 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_9 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_10 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_11 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_12 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_13 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_14 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_15 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_16 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_17 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_18 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_19 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_20 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_21 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_22 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_23 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_24 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_25 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_26 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_27 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_28 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_29 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_30 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_31 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_32 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_33 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_34 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_35 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_36 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_37 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_38 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_39 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_40 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_41 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_42 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_43 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_44 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_45 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_46 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_47 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_48 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_49 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_50 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_51 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_52 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_53 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_54 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_55 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_56 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_57 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_58 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_59 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_60 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_61 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_62 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_63 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_64 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_65 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_66 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_67 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_68 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_69 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_70 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_71 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_72 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_73 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_74 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_75 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_76 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_77 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_78 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_79 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_80 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_81 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_82 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_83 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_84 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_85 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_86 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_87 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_88 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_89 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_90 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_91 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_92 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_93 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_94 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_95 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_96 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_97 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_98 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_99 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_100 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_101 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_102 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_103 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_104 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_105 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_106 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_108 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_109 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_110 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_111 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_112 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_113 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_114 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_115 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_116 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_117 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_118 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_119 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_120 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_121 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_122 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_123 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_124 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_125 | 0.0 | 1.0 | 0.0 |
| AFAFIIAE_126 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_127 | 1.0 | 0.0 | 1.0 |
| AFAFIIAE_128 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AFAFIIAE_55 | 1456 | 28248 | False | Siphoviridae | VOG9741, VOG0152, VOG4994, VOG3643, VOG6386, VOG0044, VOG2338, VOG0198, VOG4570, VOG3699, VOG4544, VOG0691, VOG0692, VOG5616, VOG1183, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG5601, VOG9763, VOG0701, VOG4705, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)