Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCCEJNIB_53 | 138394 | 137690 | WalR | 2.06e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HCCEJNIB_8 | 18262 | 18459 | CspR | 4.33e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HCCEJNIB_16 | 27644 | 28705 | repUS74 | 1062 / 1062 | 98.78 | CP000424 |
| HCCEJNIB_18 | 11975 | 13033 | repUS75 | 1059 / 1059 | 96.60 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCCEJNIB_1 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_2 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_3 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_4 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_5 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_6 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_7 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_8 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_9 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_10 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_11 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_12 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_13 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_14 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_15 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_16 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_17 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_18 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_19 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_20 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_21 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_22 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_23 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_24 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_25 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_26 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_27 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_28 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_29 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_30 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_31 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_32 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_33 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_35 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_36 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_37 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_38 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_39 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_40 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_41 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_42 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_43 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_44 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_45 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_46 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_47 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_48 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_49 | 1.0 | 0.0 | 1.0 |
| HCCEJNIB_50 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_51 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_52 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_53 | 0.0 | 1.0 | 0.0 |
| HCCEJNIB_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCCEJNIB_22 | 53837 | 65572 | False | Siphoviridae | VOG6409, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632 |
| HCCEJNIB_22 | 234941 | 272543 | False | Siphoviridae | VOG3412, VOG4918, VOG0054, VOG7888, VOG4705, VOG4599, VOG4605, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG0198, VOG0044, VOG3643, VOG3643, VOG2820, VOG9759, VOG4813, VOG4693, VOG7735, VOG0025, VOG4799, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG3459, VOG3711, VOG4552, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)