Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NDHGOJBG_1 | 20032 | 19328 | WalR | 1.20e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NDHGOJBG_22 | 88642 | 88448 | CspR | 2.02e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NDHGOJBG_22 | 88642 | 88445 | CspA | 3.10e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NDHGOJBG_35 | 1883 | 2773 | rep38 | 903 / 903 | 97.56 | CP005943 |
| NDHGOJBG_23 | 4527 | 5627 | repUS73 | 1101 / 1101 | 95.00 | CP002654 |
| NDHGOJBG_48 | 385 | 883 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NDHGOJBG_1 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_2 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_3 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_4 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_5 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_6 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_7 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_8 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_9 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_10 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_11 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_12 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_13 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_14 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_15 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_16 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_17 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_18 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_19 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_20 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_21 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_22 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_23 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_24 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_25 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_26 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_27 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_28 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_29 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_30 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_31 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_32 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_33 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_34 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_35 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_36 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_37 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_38 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_40 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_41 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_42 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_43 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_44 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_46 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_47 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_48 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_50 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_51 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_52 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_53 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_55 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_56 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_57 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_58 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_59 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_60 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_61 | 1.0 | 0.0 | 1.0 |
| NDHGOJBG_62 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_63 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_64 | 0.0 | 1.0 | 0.0 |
| NDHGOJBG_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NDHGOJBG_11 | 148811 | 186505 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0996, VOG0198, VOG4693, VOG4552, VOG4566, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495, VOG11003 |
| NDHGOJBG_64 | 79326 | 113401 | False | Siphoviridae | VOG0514, VOG4566, VOG0189, VOG6005, VOG0044, VOG9671, VOG0198, VOG4841, VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG0753, VOG0054, VOG1521, VOG1191 |
Phigaro v2.4.0 (Database: Jan. 2024 release)