Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HOGJLOOP_66 | 119457 | 118753 | WalR | 1.30e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HOGJLOOP_23 | 13990 | 14187 | CspR | 4.38e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HOGJLOOP_32 | 5067 | 6125 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
| HOGJLOOP_12 | 47893 | 48954 | repUS74 | 1062 / 1062 | 99.72 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HOGJLOOP_1 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_2 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_3 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_4 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_5 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_6 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_7 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_8 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_9 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_10 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_11 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_12 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_13 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_14 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_15 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_16 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_17 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_18 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_19 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_20 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_21 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_22 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_23 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_24 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_25 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_26 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_27 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_28 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_29 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_30 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_31 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_32 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_33 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_34 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_35 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_36 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_37 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_38 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_39 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_40 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_41 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_43 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_44 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_45 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_46 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_47 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_48 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_49 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_50 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_51 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_52 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_53 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_54 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_55 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_56 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_57 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_58 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_59 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_60 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_61 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_62 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_63 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_64 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_65 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_66 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_67 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_68 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_69 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_70 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_71 | 1.0 | 0.0 | 1.0 |
| HOGJLOOP_72 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_73 | 0.0 | 1.0 | 0.0 |
| HOGJLOOP_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HOGJLOOP_10 | 32440 | 55154 | False | Siphoviridae | VOG0703, VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG9153, VOG0198, VOG1563 |
| HOGJLOOP_11 | 99900 | 108648 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG1886, VOG4581, VOG4609, VOG4632 |
| HOGJLOOP_44 | 59437 | 68271 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606 |
| HOGJLOOP_72 | 97206 | 121813 | False | Siphoviridae | VOG4605, VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG0796 |
Phigaro v2.4.0 (Database: Jan. 2024 release)