Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LCCBHLAF_77 | 28802 | 28098 | WalR | 6.80e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LCCBHLAF_58 | 6263 | 6066 | CspR | 4.16e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCCBHLAF_1 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_2 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_3 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_4 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_5 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_6 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_7 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_8 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_9 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_10 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_11 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_12 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_13 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_14 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_15 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_16 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_17 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_18 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_19 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_20 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_21 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_22 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_23 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_24 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_25 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_26 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_27 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_28 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_29 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_30 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_31 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_32 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_33 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_34 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_35 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_36 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_37 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_38 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_39 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_40 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_41 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_42 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_43 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_44 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_45 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_46 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_47 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_48 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_49 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_50 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_51 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_52 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_53 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_54 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_55 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_56 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_57 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_58 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_59 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_60 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_61 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_62 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_63 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_64 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_65 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_66 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_67 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_68 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_69 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_70 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_71 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_72 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_73 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_74 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_75 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_76 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_77 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_78 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_79 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_80 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_81 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_82 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_83 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_84 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_85 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_86 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_87 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_88 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_89 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_90 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_91 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_92 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_93 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_94 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_95 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_96 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_97 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_98 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_99 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_100 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_101 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_102 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_103 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_104 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_105 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_106 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_107 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_108 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_109 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_110 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_111 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_112 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_113 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_115 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_116 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_117 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_118 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_119 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_120 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_121 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_122 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_123 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_124 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_125 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_126 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_127 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_128 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_129 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_130 | 1.0 | 0.0 | 1.0 |
| LCCBHLAF_131 | 0.0 | 1.0 | 0.0 |
| LCCBHLAF_132 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCCBHLAF_60 | 1456 | 28248 | False | Siphoviridae | VOG9741, VOG0152, VOG4994, VOG3643, VOG6386, VOG0044, VOG2338, VOG0198, VOG4570, VOG3699, VOG4544, VOG0691, VOG0692, VOG5616, VOG1183, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG5601, VOG9763, VOG0701, VOG4705, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)