Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BEEBOMFG_31 | 12934 | 14907 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BEEBOMFG_31 | 12982 | 14907 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| BEEBOMFG_35 | 12634 | 13584 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| BEEBOMFG_35 | 12634 | 13584 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| BEEBOMFG_35 | 12634 | 13584 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| BEEBOMFG_35 | 12634 | 13584 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BEEBOMFG_31 | 12982 | 14904 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| BEEBOMFG_35 | 12633 | 13586 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BEEBOMFG_23 | 30233 | 28653 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BEEBOMFG_1 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_2 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_3 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_4 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_5 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_6 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_7 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_8 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_9 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_10 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_11 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_12 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_13 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_14 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_15 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_16 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_17 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_18 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_19 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_20 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_21 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_22 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_23 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_24 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_25 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_26 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_27 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_28 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_29 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_30 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_31 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_32 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_33 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_34 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_35 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_36 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_37 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_38 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_39 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_40 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_41 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_42 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_43 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_44 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_45 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_46 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_47 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_48 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_49 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_50 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_51 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_53 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_54 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_55 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_56 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_57 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_58 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_59 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_60 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_61 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_62 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_63 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_64 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_65 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_66 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_67 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_68 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_69 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_70 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_72 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_73 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_74 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_75 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_76 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_77 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_79 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_80 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_81 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_82 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_83 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_84 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_85 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_86 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_87 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_89 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_91 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_92 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_94 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_95 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_96 | 1.0 | 0.0 | 1.0 |
| BEEBOMFG_97 | 0.0 | 1.0 | 0.0 |
| BEEBOMFG_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BEEBOMFG_37 | 65514 | 75965 | False | Unknown | VOG4565, |
Phigaro v2.4.0 (Database: Jan. 2024 release)