Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PONIIKHG_16 | 60804 | 62778 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| PONIIKHG_52 | 2639 | 3373 | ErmG | ARO:3000522 | ErmG | 98.77 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PONIIKHG_16 | 60852 | 62777 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| PONIIKHG_52 | 2639 | 3373 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| PONIIKHG_52 | 56 | 1116 | mef(A) | Erythromycin, Azithromycin | 95.10 | 87.11 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PONIIKHG_9 | 92563 | 93468 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| PONIIKHG_16 | 60852 | 62774 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| PONIIKHG_52 | 2639 | 3370 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.18 | 100.00 | WP_063844791.1 |
| PONIIKHG_52 | 49 | 1113 | mef(A) | macrolide efflux MFS transporter Mef(A) | PARTIALX | 98.31 | 87.01 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PONIIKHG_44 | 255570 | 253990 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PONIIKHG_91 | 66 | 646 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PONIIKHG_1 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_2 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_3 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_4 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_5 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_6 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_7 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_8 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_9 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_10 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_11 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_12 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_13 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_14 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_15 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_16 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_17 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_18 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_19 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_20 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_21 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_22 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_23 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_24 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_25 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_26 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_27 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_28 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_29 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_30 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_31 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_32 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_33 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_34 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_35 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_36 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_37 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_38 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_39 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_40 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_41 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_42 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_43 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_44 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_45 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_46 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_47 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_48 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_49 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_50 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_51 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_52 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_54 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_55 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_56 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_57 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_58 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_59 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_60 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_61 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_62 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_63 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_64 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_65 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_66 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_67 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_68 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_69 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_70 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_71 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_72 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_73 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_74 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_75 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_76 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_77 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_78 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_79 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_80 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_81 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_82 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_83 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_84 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_85 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_86 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_87 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_88 | 0.0 | 1.0 | 0.0 |
| PONIIKHG_89 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_90 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_91 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_92 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_93 | 1.0 | 0.0 | 1.0 |
| PONIIKHG_94 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PONIIKHG_22 | 187662 | 191088 | False | Unknown | VOG8241, |
Phigaro v2.4.0 (Database: Jan. 2024 release)