Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OEDIIJFK_9 | 92798 | 94723 | tet(Q) | ARO:3000191 | tet(Q) | 96.88 | 97.56 | Z21523.1 |
| OEDIIJFK_18 | 66910 | 67875 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OEDIIJFK_18 | 66910 | 67875 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| OEDIIJFK_18 | 66910 | 67875 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| OEDIIJFK_18 | 66910 | 67875 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| OEDIIJFK_18 | 66910 | 67875 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| OEDIIJFK_9 | 92798 | 94723 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.68 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OEDIIJFK_50 | 254 | 1159 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| OEDIIJFK_18 | 66913 | 67875 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| OEDIIJFK_9 | 92798 | 94720 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 96.88 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OEDIIJFK_33 | 60351 | 58771 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.72 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OEDIIJFK_1 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_2 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_3 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_4 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_5 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_6 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_7 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_8 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_9 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_10 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_11 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_12 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_13 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_14 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_15 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_16 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_17 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_18 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_19 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_20 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_21 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_22 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_23 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_24 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_25 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_26 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_27 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_28 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_29 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_30 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_31 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_32 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_33 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_34 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_35 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_36 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_37 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_38 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_39 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_40 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_41 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_42 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_43 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_44 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_45 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_46 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_47 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_49 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_50 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_51 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_52 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_53 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_54 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_55 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_56 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_57 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_58 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_59 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_60 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_61 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_62 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_63 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_64 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_65 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_66 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_67 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_68 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_69 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_70 | 1.0 | 0.0 | 1.0 |
| OEDIIJFK_71 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_72 | 0.0 | 1.0 | 0.0 |
| OEDIIJFK_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OEDIIJFK_4 | 15089 | 27158 | False | Siphoviridae | VOG0327, |
| OEDIIJFK_9 | 81965 | 89864 | True | Siphoviridae | VOG4551, |
Phigaro v2.4.0 (Database: Jan. 2024 release)