Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGCOPOIN_54 | 52464 | 54389 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGCOPOIN_54 | 52464 | 54389 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGCOPOIN_54 | 52467 | 54389 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CGCOPOIN_11 | 18420 | 16840 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGCOPOIN_1 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_2 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_3 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_4 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_5 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_6 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_7 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_8 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_9 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_10 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_11 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_12 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_13 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_14 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_15 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_16 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_17 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_18 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_19 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_20 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_21 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_22 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_23 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_24 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_25 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_26 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_27 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_28 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_29 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_30 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_31 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_32 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_33 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_34 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_35 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_36 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_37 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_38 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_39 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_40 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_41 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_42 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_43 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_44 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_45 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_48 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_49 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_50 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_51 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_52 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_53 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_54 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_55 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_56 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_57 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_58 | 1.0 | 0.0 | 1.0 |
| CGCOPOIN_59 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_60 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_61 | 0.0 | 1.0 | 0.0 |
| CGCOPOIN_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGCOPOIN_9 | 39223 | 50016 | False | Siphoviridae | VOG4564, |
Phigaro v2.4.0 (Database: Jan. 2024 release)