Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLHGJPPF_11 | 184815 | 186740 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| CLHGJPPF_13 | 15870 | 16835 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CLHGJPPF_11 | 184815 | 186740 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| CLHGJPPF_13 | 15870 | 16835 | cfxA3 | Ampicillin | 98.45 | 100.00 | AF472622 |
| CLHGJPPF_13 | 15870 | 16835 | cfxA4 | Unknown Beta-lactam | 98.45 | 100.00 | AY769933 |
| CLHGJPPF_13 | 15870 | 16835 | cfxA5 | Unknown Beta-lactam | 98.45 | 100.00 | AY769934 |
| CLHGJPPF_13 | 15870 | 16835 | cfxA | Cefoxitin, Ampicillin | 98.45 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLHGJPPF_11 | 184818 | 186740 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CLHGJPPF_13 | 15873 | 16835 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CLHGJPPF_55 | 96280 | 94700 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CLHGJPPF_1 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_2 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_3 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_4 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_5 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_6 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_7 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_8 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_9 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_10 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_11 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_12 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_13 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_14 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_15 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_16 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_17 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_18 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_19 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_20 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_21 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_22 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_23 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_24 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_25 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_26 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_27 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_28 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_29 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_30 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_31 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_32 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_33 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_34 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_35 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_36 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_37 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_38 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_39 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_40 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_41 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_42 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_43 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_44 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_45 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_46 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_47 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_48 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_49 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_50 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_51 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_52 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_53 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_54 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_55 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_56 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_57 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_58 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_59 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_60 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_61 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_63 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_64 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_65 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_66 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_67 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_68 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_69 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_70 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_71 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_72 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_73 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_74 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_75 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_76 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_77 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_78 | 1.0 | 0.0 | 1.0 |
| CLHGJPPF_79 | 0.0 | 1.0 | 0.0 |
| CLHGJPPF_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CLHGJPPF_77 | 98213 | 109691 | False | Siphoviridae | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)