Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMOBBPNF_11 | 1882 | 3807 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HMOBBPNF_11 | 1882 | 3807 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMOBBPNF_11 | 1882 | 3804 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HMOBBPNF_3 | 102631 | 101051 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HMOBBPNF_1 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_2 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_3 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_4 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_5 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_6 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_7 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_8 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_9 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_10 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_11 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_12 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_13 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_14 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_15 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_16 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_17 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_18 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_19 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_20 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_21 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_22 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_23 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_24 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_25 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_26 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_27 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_28 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_29 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_30 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_31 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_32 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_33 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_34 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_35 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_36 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_37 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_38 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_39 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_40 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_41 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_42 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_43 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_44 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_45 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_46 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_47 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_48 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_49 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_50 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_52 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_53 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_54 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_55 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_56 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_57 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_58 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_59 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_60 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_61 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_62 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_63 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_64 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_65 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_66 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_67 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_68 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_69 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_70 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_71 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_72 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_73 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_75 | 1.0 | 0.0 | 1.0 |
| HMOBBPNF_76 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_77 | 0.0 | 1.0 | 0.0 |
| HMOBBPNF_78 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HMOBBPNF_10 | 12872 | 23181 | False | Myoviridae | VOG3699, |
| HMOBBPNF_14 | 36236 | 44307 | False | Siphoviridae | VOG4581, |
| HMOBBPNF_77 | 61709 | 73380 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)